Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs6930333 | chr6:36014588 | G/A | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |
| LGG | rs6932598 | chr6:35999080 | G/A | 9.5E-10 | 407 | 15.6 | 15.17 | 6.15 | KM Plot |
| LGG | rs6933825 | chr6:27890631 | C/T | 3.69E-5 | 407 | 14.8 | 15.57 | 15.2 | KM Plot |
| LGG | rs6934216 | chr6:36027633 | G/A | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |
| LGG | rs6936327 | chr6:36069875 | C/T | 9.92E-10 | 407 | 15.63 | 15.18 | 6.15 | KM Plot |
| LGG | rs6937944 | chr6:33815159 | C/G | 0.000195 | 405 | 15.3 | 14.8 | 16.37 | KM Plot |
| LGG | rs6957400 | chr7:54944573 | A/G | 1.84E-6 | 407 | 15.93 | 14.9 | 8.23 | KM Plot |
| LGG | rs6976346 | chr7:92863129 | T/C | 0.000153 | 401 | 15.18 | 16.52 | 8.97 | KM Plot |
| LGG | rs7024536 | chr9:95376594 | T/C | 0.000199 | 406 | 15.15 | 18.07 | 7.12 | KM Plot |
| LGG | rs7028653 | chr9:126947801 | C/T | 1.69E-6 | 406 | 15.37 | 10.73 | 12.92 | KM Plot |
| LGG | rs7028861 | chr9:126948057 | A/G | 1.69E-6 | 406 | 15.37 | 10.73 | 12.92 | KM Plot |
| LGG | rs7031514 | chr9:94615903 | A/G | 6.75E-5 | 406 | 15.18 | 16.62 | 17.55 | KM Plot |
| LGG | rs7032872 | chr9:126948707 | A/C | 1.69E-6 | 406 | 15.37 | 10.73 | 12.92 | KM Plot |
| LGG | rs7032879 | chr9:126948722 | A/G | 1.69E-6 | 406 | 15.37 | 10.73 | 12.92 | KM Plot |
| LGG | rs7033351 | chr9:126948970 | C/T | 1.69E-6 | 406 | 15.37 | 10.73 | 12.92 | KM Plot |